PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000688878
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 265aa    MW: 29499.6 Da    PI: 7.5563
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000688878genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1232.5e-38201472128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                     pGf F+Ptde lv++yLk+k+eg++ ++ +vi+e+d++k+eP d+p    + + kew+fFs+ d ky +g+r nr t +g+ k tg d+++ ++ 
  MDP0000688878  20 LPGFGFSPTDELLVSYYLKNKIEGTDSHFRHVIPEIDVCKYEPCDIPaFFPEVHGKEWFFFSRLDYKY-NGTRCNRXTGQGFYKITGMDRKIRAEe 114
                    59***************************999***************545556889***********9.79**********************985 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +++++g k++L+fy+gr pk++kt+Wv hey+l
  MDP0000688878 115 SKAVIGKKRILTFYEGRLPKSKKTNWVXHEYNL 147
                    66779**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-4013168IPR003441NAC domain
PROSITE profilePS5100541.97619170IPR003441NAC domain
PfamPF023658.0E-1921147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSXSVAPEEG DAMRVNVSRL PGFGFSPTDE LLVSYYLKNK IEGTDSHFRH VIPEIDVCKY  60
EPCDIPAFFP EVHGKEWFFF SRLDYKYNGT RCNRXTGQGF YKITGMDRKI RAEESKAVIG  120
KKRILTFYEG RLPKSKKTNW VXHEYNLTET KVSSKPTKQM NFVLWRLKNM SASYKKPKGD  180
PIHGELADTG ATSEDYQAAP AHGSTCGPAR EADPWLEHGA HAPPLETLCS TAVHGSAGDF  240
SCQLSDDTSL VATMGPRAGD TFVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B9e-3181767171NAC domain-containing protein 19
4dul_A9e-3181767171NAC domain-containing protein 19
1ut7_B9e-3181767171NO APICAL MERISTEM PROTEIN
1ut7_A9e-3181767171NO APICAL MERISTEM PROTEIN
1ut4_B9e-3181767171NO APICAL MERISTEM PROTEIN
1ut4_A9e-3181767171NO APICAL MERISTEM PROTEIN
3swp_D1e-30817610174NAC domain-containing protein 19
3swp_C1e-30817610174NAC domain-containing protein 19
3swp_B1e-30817610174NAC domain-containing protein 19
3swp_A1e-30817610174NAC domain-containing protein 19
3swm_D1e-30817610174NAC domain-containing protein 19
3swm_C1e-30817610174NAC domain-containing protein 19
3swm_B1e-30817610174NAC domain-containing protein 19
3swm_A1e-30817610174NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.38060.0bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008354053.11e-146PREDICTED: NAC domain-containing protein 72-like
TrEMBLM5X4Q71e-72M5X4Q7_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13710524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.24e-39TCV-interacting protein